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Hmm I checked the orig bios image for any special handling and there is none. Even it seems that EC has its own flash somewhere else. (this is good)
Perhaps there are some locks in chip itself? Any expert here on that? Can we read the status reg from the chip? The WP# of the chip seems just to enable/disable modifications to the to the BP bits.
I suspect the part flashing does not work well. There seems to be no obstacles elsewhere.
Can you post here lspci -xxx
Rudolf