Here's the resource tree with my patch, note that it's not perfect yet.
domain_0(PCI_DOMAIN: 0000) assign_resources done, bus 0 link: 0 root(Root Device) assign_resources done, bus 0 link: 0 Root Device resource base 1000 size 2000 align c gran 0 limit ffff flags 40000100 index 0 Root Device resource base fc000000 size 1200000 align 18 gran 0 limit febfffff flags 40000200 index 1 PCI_DOMAIN: 0000 resource base 400 size 0 align 0 gran 0 limit ffff flags 40040100 index 10000000 PCI_DOMAIN: 0000 resource base 0 size 0 align 0 gran 0 limit fcffffffff flags 40040200 index 10000100 PCI_DOMAIN: 0000 resource base 0 size a0000 align 0 gran 0 limit 0 flags e0004200 index 10 PCI_DOMAIN: 0000 resource base c0000 size ff40000 align 0 gran 0 limit 0 flags e0004200 index 20 PCI: 00:18.0 resource base fd200000 size 0 align 14 gran 14 limit ffffffffff flags 60001200 index 1b8 PCI: 00:18.0 resource base 1000 size 2000 align c gran c limit ffff flags 60000100 index 1c0 PCI: 00:18.0 resource base fc000000 size 1200000 align 18 gran 14 limit febfffff flags 60000200 index 1b0 PCI: 00:18.0 resource base a0000 size 20000 align 0 gran 0 limit 0 flags 0 index 1a8 PCI: 00:06.0 resource base 1000 size 1000 align c gran c limit ffff flags 60000102 index 1c PCI: 00:06.0 resource base fc000000 size 1100000 align 18 gran 14 limit febfffff flags 60000202 index 20 PCI: 01:00.0 resource base fd050000 size 1000 align c gran c limit ffffffff flags 60000200 index 10 PCI: 01:00.1 resource base fd051000 size 1000 align c gran c limit ffffffff flags 60000200 index 10 PCI: 01:04.0 resource base fc000000 size 1000000 align 18 gran 18 limit ffffffff flags 60000200 index 10 PCI: 01:04.0 resource base fd053000 size 100 align 8 gran 8 limit ffffffff flags 60000200 index 14 PCI: 01:04.0 resource base 1000 size 100 align 8 gran 8 limit ffff flags 60000100 index 18 PCI: 01:04.0 resource base fd040000 size 10000 align 10 gran 10 limit ffffffff flags 60002200 index 30 PCI: 01:05.0 resource base fd000000 size 20000 align 11 gran 11 limit ffffffff flags 60000200 index 10 PCI: 01:05.0 resource base fd020000 size 20000 align 11 gran 11 limit ffffffff flags 60000200 index 14 PCI: 01:05.0 resource base 1400 size 40 align 6 gran 6 limit ffff flags 60000100 index 18 PCI: 01:05.0 resource base fd052000 size 800 align b gran b limit ffffffff flags 60002200 index 30 PCI: 00:07.0 resource base 0 size 0 align 0 gran 0 limit 0 flags 40040100 index 10000000 PCI: 00:07.0 resource base 0 size 0 align 0 gran 0 limit 0 flags 40040200 index 10000100 PNP: 002e.2 resource base 0 size 8 align 3 gran 3 limit 7ff flags c0000100 index 60 PNP: 002e.2 resource base 0 size 1 align 0 gran 0 limit 0 flags 400 index 70 PNP: 002e.5 resource base 0 size 1 align 0 gran 0 limit ffffffff flags c0000100 index 60 PNP: 002e.5 resource base 0 size 1 align 0 gran 0 limit ffffffff flags c0000100 index 62 PNP: 002e.5 resource base 0 size 1 align 0 gran 0 limit 0 flags 400 index 70 PNP: 002e.5 resource base 0 size 1 align 0 gran 0 limit 0 flags 400 index 72 PCI: 00:07.1 resource base 2020 size 10 align 4 gran 4 limit ffff flags 60000100 index 20 PCI: 00:07.2 resource base 2000 size 20 align 5 gran 5 limit ffff flags 60000100 index 10 PCI: 00:0a.1 resource base fd100000 size 1000 align c gran c limit ffffffffffffffff flags 60000201 index 10 PCI: 00:0b.1 resource base fd101000 size 1000 align c gran c limit fffffffffffffff